PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0156.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 176aa    MW: 19644.8 Da    PI: 4.168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-1216981299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         + +r+++   f+++ + ++  +  ++l++   + + vk+   k  g ++++ GW+eFv  ngLk g f+vF++dg+ +f   vk+f++
  Kaladp0018s0156.1.p 16 NGARMRVCDAFLATLS-DEVIPERVVLRNCLQEAFAVKV--FKENGVVYFGVGWREFVVWNGLKLGYFLVFRYDGEGGF--DVKIFNN 98
                         4567888899997773.4467788***************..999999***************************98888..9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.56E-13597No hitNo description
Gene3DG3DSA:2.40.330.101.4E-155101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-155101IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0017799IPR003340B3 DNA binding domain
PfamPF023623.8E-101498IPR003340B3 DNA binding domain
PROSITE profilePS508639.8123999IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGVKPEFFFV FMPLINGARM RVCDAFLATL SDEVIPERVV LRNCLQEAFA VKVFKENGVV  60
YFGVGWREFV VWNGLKLGYF LVFRYDGEGG FDVKIFNNSG CVDNGRDEAA DRDEEESSDD  120
DEEAEDESND SAADFSDSTY SETSEASGSG TRINTKKKNN IHPKRGIQVC DLIDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-11B3 family protein